image.h File Reference

Data Structures
struct	imagefeature
struct	header_cache_entry
struct	crystal_refls
struct	image

Macros
#define	HEADER_CACHE_SIZE   (128)

Typedefs
typedef struct _imagefeaturelist	ImageFeatureList
typedef struct _image_data_arrays	ImageDataArrays

Enumerations
enum	HeaderCacheType {   HEADER_FLOAT ,   HEADER_INT ,   HEADER_STR }
enum	DataSourceType {   DATA_SOURCE_TYPE_UNKNOWN ,   DATA_SOURCE_TYPE_NONE ,   DATA_SOURCE_TYPE_HDF5 ,   DATA_SOURCE_TYPE_CBF ,   DATA_SOURCE_TYPE_CBFGZ ,   DATA_SOURCE_TYPE_MSGPACK ,   DATA_SOURCE_TYPE_SEEDEE }

Functions
int	is_hdf5_file (const char *filename, int *err)
int	is_cbf_file (const char *filename, int *err)
int	is_cbfgz_file (const char *filename, int *err)
ImageFeatureList *	image_feature_list_new (void)
void	image_feature_list_free (ImageFeatureList *flist)
void	image_add_feature (ImageFeatureList *flist, double x, double y, int pn, double intensity, const char *name)
void	image_remove_feature (ImageFeatureList *flist, int idx)
struct imagefeature *	image_feature_closest (ImageFeatureList *flist, double fs, double ss, int pn, double *d, int *idx)
int	image_feature_count (ImageFeatureList *flist)
struct imagefeature *	image_get_feature (ImageFeatureList *flist, int idx)
const struct imagefeature *	image_get_feature_const (const ImageFeatureList *flist, int idx)
ImageFeatureList *	sort_peaks (ImageFeatureList *flist)
ImageFeatureList *	image_feature_list_copy (const ImageFeatureList *flist)
void	image_add_crystal (struct image *image, Crystal *cryst)
void	image_add_crystal_refls (struct image *image, Crystal *cryst, RefList *reflist)
int	remove_flagged_crystals (struct image *image)
void	free_all_crystals (struct image *image)
void	mark_resolution_range_as_bad (struct image *image, double min, double max)
struct image *	image_new (void)
struct image *	image_read (const DataTemplate *dtempl, const char *filename, const char *event, int no_image_data, int no_mask_data, ImageDataArrays *ida)
struct image *	image_create_for_simulation (const DataTemplate *dtempl)
struct image *	image_read_data_block (const DataTemplate *dtempl, void *data_block, size_t data_block_size, char *meta_data, DataSourceType type, int serial, int no_image_data, int no_mask_data, ImageDataArrays *ida)
void	image_free (struct image *image)
int	image_read_header_float (struct image *image, const char *from, double *val)
void	image_cache_header_float (struct image *image, const char *header_name, double header_val)
void	image_cache_header_int (struct image *image, const char *header_name, int header_val)
void	image_cache_header_str (struct image *image, const char *header_name, const char *header_val)
ImageFeatureList *	image_read_peaks (const DataTemplate *dtempl, const char *filename, const char *event, int half_pixel_shift)
char **	image_expand_frames (const DataTemplate *dtempl, const char *filename, int *nframes)
ImageDataArrays *	image_data_arrays_new (void)
void	image_data_arrays_free (ImageDataArrays *ida)
int	image_create_dp_bad (struct image *image, const DataTemplate *dtempl)
int	image_set_zero_data (struct image *image, const DataTemplate *dtempl)

Detailed Description

Information about images

Typedef Documentation

ImageFeatureList

typedef struct _imagefeaturelist ImageFeatureList

An opaque type representing a list of image features

Function Documentation

image_create_for_simulation()

struct image * image_create_for_simulation ( const DataTemplate * dtempl )

extern

Create an image structure, suitable for simulation.

WARNING: This is probably not the routine you are looking for! If you use this routine anywhere other than a simulation program, then you are abusing the API and can expect breakage. In particular, your program will only work when the experiment is completely described by the DataTemplate, with no values whatsoever coming from image headers.

Returns

the new image structure.

sort_peaks()

ImageFeatureList * sort_peaks ( ImageFeatureList * flist )

extern

Strongest first.