Macros
#define	INTEGRATION_DEFAULTS_RINGS (INTEGRATION_RINGS)

#define	INTEGRATION_DEFAULTS_PROF2D (INTEGRATION_PROF2D \| INTEGRATION_CENTER)

#define	INTEGRATION_METHOD_MASK (0xff)

Enumerations
enum	IntDiag { INTDIAG_NONE , INTDIAG_RANDOM , INTDIAG_ALL , INTDIAG_INDICES , INTDIAG_NEGATIVE , INTDIAG_IMPLAUSIBLE , INTDIAG_STRONG }

enum	IntegrationMethod { INTEGRATION_NONE = 0 , INTEGRATION_RINGS = 1 , INTEGRATION_PROF2D = 2 , INTEGRATION_SATURATED = 256 , INTEGRATION_CENTER = 512 , INTEGRATION_GRADIENTBG = 2048 }

Functions
IntegrationMethod	integration_method (const char t, int err)

char *	str_integration_method (IntegrationMethod m)

struct intcontext *	intcontext_new (struct image image, UnitCell cell, IntegrationMethod meth, int ir_inn, int ir_mid, int ir_out, int **masks)

int	integrate_rings_once (Reflection refl, struct intcontext ic, pthread_mutex_t *term_lock)

void	intcontext_free (struct intcontext *ic)

void	integrate_all (struct image *image, IntegrationMethod meth, double ir_inn, double ir_mid, double ir_out, IntDiag int_diag, signed int idh, signed int idk, signed int idl)

void	integrate_all_2 (struct image *image, IntegrationMethod meth, double push_res, double ir_inn, double ir_mid, double ir_out, IntDiag int_diag, signed int idh, signed int idk, signed int idl)

void	integrate_all_3 (struct image *image, IntegrationMethod meth, PartialityModel pmodel, double push_res, double ir_inn, double ir_mid, double ir_out, IntDiag int_diag, signed int idh, signed int idk, signed int idl)

void	integrate_all_4 (struct image image, IntegrationMethod meth, PartialityModel pmodel, double push_res, double ir_inn, double ir_mid, double ir_out, IntDiag int_diag, signed int idh, signed int idk, signed int idl, pthread_mutex_t term_lock)

void	integrate_all_5 (struct image image, IntegrationMethod meth, PartialityModel pmodel, double push_res, double ir_inn, double ir_mid, double ir_out, IntDiag int_diag, signed int idh, signed int idk, signed int idl, pthread_mutex_t term_lock, int overpredict)

Detailed Description

Integration of reflections

Macro Definition Documentation

◆ INTEGRATION_METHOD_MASK

#define INTEGRATION_METHOD_MASK (0xff)

This defines the bits in IntegrationMethod which are used to represent the core of the integration method.

Enumeration Type Documentation

◆ IntDiag

enum IntDiag

An IntDiag describes the condition under which the integration subsystem should display diagnostic information to the user.

Enumerator
INTDIAG_NONE	Never show diagnostics
INTDIAG_RANDOM	Show diagnostics for a randomly selected 1% of reflections
INTDIAG_ALL	Show diagnostics for all reflections
INTDIAG_INDICES	Show diagnostics when the Miller indices of the reflection are the ones specified
INTDIAG_NEGATIVE	Show diagnostics when the measured intensity is less than minus three times its estimated error.
INTDIAG_IMPLAUSIBLE	Show diagnostics when the measured intensity is less than minus five times its estimated error.
INTDIAG_STRONG	Show diagnostics when the measured intensity is more than three times its estimated error.

◆ IntegrationMethod

enum IntegrationMethod

An enumeration of all the available integration methods. The first items are the actual integration methods. The later ones are flags which can be ORed with the method to affect its behaviour.

Enumerator
INTEGRATION_NONE	No integration at all
INTEGRATION_RINGS	Summation of pixel values inside ring, minus background
INTEGRATION_PROF2D	Two dimensional profile fitting
INTEGRATION_SATURATED	Integrate saturated reflections
INTEGRATION_CENTER	Center the peak in the box prior to integration
INTEGRATION_GRADIENTBG	Fit a gradient to the background

Macros