! of velocity bunching input file for Start-to-End simulation of the FLASH

#00 ACC1 (velocity bunching section)
action=ASTRA
        task=run
                command=mpistart, /home/vogtm/bin/Astra64, acc1.in
		work_dir=ACC1

#01 Beam Current before BC2 (after ACC1)
! fig0
action=analysis
	task=read
		extr_part_1=True
		sort_len=True
		E_ref=147800000.0
		in_file=ACC1/acc1.1500.001
		format=astra
        task=slice_analysis
                M_av=2500
	task=m_current
                sigmaI=5e-007


#02 ASTRA -> CSRtrack
! fig1,2
action=processor
	task=read
		extr_part_1=False
		sort_len=False
		in_file=ACC1/acc1.1500.001
		format=astra
	task=add_wake
		wake_delta=0
		m_interv=[-0.005, 0.005]
		sigmaI=0.0001
		wake=wake0
	task=center
		centerxs=True
		interv=[-0.002, 0.002]
		centerys=True
		centerx=True
		centery=True
	task=matching
		interv=[-0.002, 0.002]
		xpar=[4.619, 20.174,1.0]
		ypar=[-0.012, 2.809,1.0]
	task=write
		out_file=BC2/in/bc2_in.fmt1
		format=fmt1

#03 BC2 (CSRtrack)
action=CSRtrack
        task=run
		work_dir=BC2
		command=./CSRtrack_1.201_64_may2007
	
#04 CSRTrack  -> ASTRA
action=processor
	task=read
		sort_len=False
		extr_part_1=False
		in_file=BC2/out/bc2_out.fmt1
		format=fmt1
	task=center
		centerz=True
	task=define_ref_part
	task=drift
		length=-1
	task=write
		z0=24.854 
		out_file=ACC23/bc2_out.ini
		format=astra

#05 Beam Current after BC2 (after ACC1)
!fig3
action=analysis
	task=read
		extr_part_1=True
		sort_len=True
		E_ref=148191593.308
		in_file=ACC23/bc2_out.ini
		format=astra
        task=slice_analysis
                M_av=2500
	task=m_current
                sigmaI=5e-007



#06 ACC23 (ASTRA)
action=ASTRA
        task=run
		command=mpistart, /home/vogtm/bin/Astra64, acc23_1.in
		work_dir=ACC23
	task=run
		command=mpistart, /home/vogtm/bin/Astra64, acc23_2.in
		work_dir=ACC23

#07 Mix
! fig4
action=processor
	task=read
		sort_len=False
		extr_part_1=True
		format=astra
		E_ref=401700000.0
		in_file2=ACC23/acc23_1.6720.001
		in_file =ACC23/acc23_2.6720.001
	task=mix
		z1=0.00064
		z2=0.00069
		zs1=-0.0084
	task=write
		z0=67.20
		out_file=ACC23/acc23_mix.ini
		format=astra


#08 Beam current before BC3
! fig5
action=analysis
	task=read
		extr_part_1=True
		sort_len=True
		E_ref=401700000.0
		in_file=ACC23/acc23_mix.ini
		format=astra
        task=slice_analysis
                M_av=2500
	task=m_current
                sigmaI=5e-007


#09 ASTRA -> CSRtrack
! fig6,7
action=processor
	task=read
		sort_len=False
		extr_part_1=False
		E_ref=401700000.0
		in_file=ACC23/acc23_mix.ini
		format=astra
	task=add_wake
		wake_delta=0
		m_interv=[-0.00075, 0.001]
		sigmaI=3e-006
		wake=wake1
	task=center
		centerxs=True
		interv=[-0.0005, 0.0005]
		centerys=True
		centerx=True
		centery=True
	task=write
		out_file=BC3/in/bc3_in.fmt1
		format=fmt1

#10 BC3 (CSRtrack)
action=CSRtrack
	task=run
		work_dir=BC3
		command=./CSRtrack_1.201_64_may2007

#11 CSRTrack  -> ASTRA
! fig8, 9, 10
action=processor
	task=read
		sort_len=False
		extr_part_1=False
		E_ref=401600000.0
		in_file=BC3/out/bc3_out.fmt1
		format=fmt1
	task=center
		centerz=True
	task=extract_slice_centr
		sigmaI=1e-006
		interv=[0, 0.0007]
		M=20000
	task=define_ref_part
	task=drift
		length=-1
	task=matching
		interv=[0.000385, 0.00039]
		xpar=[-0.286, 6.716,0]
		ypar=[-0.799, 6.56,0]
	task=write
		z0=81.355
		out_file=ACC456/bc3_out.ini
		format=astra



#12 Beam current after BC3
! fig 11
action=analysis
	task=read
		extr_part_1=True
		sort_len=True
		E_ref=401600000.0
		in_file=ACC456/bc3_out.ini
		format=astra
        task=slice_analysis
                M_av=2500
	task=m_current
                sigmaI=5e-007

#13 ACC456, LOLA (ASTRA)
action=ASTRA
	task=run
		command=mpistart, /home/vogtm/bin/Astra64, acc456.in
		work_dir=ACC456

#14 ASTRA -> CSRtrack
action=processor
	task=read
		sort_len=False
		extr_part_1=False
		E_ref=700000000.0
		in_file=ACC456/acc456.1522.001
		format=astra
	task=drift_to
		z0=152.1884
	task=add_wake
		wake_delta=-32085561497.3
		m_interv=[-0.0005, 0.0005]
		sigmaI=3e-006
		wake=wake2
	task=center
		centerxs=True
		interv=[0.000385, 0.00039]
		centerys=True
		centerx=True
		centery=True
	task=drift
		length=0.1
	task=matching
		interv=[0.000385, 0.00039]
		xpar=[1.432, 1.404,0]
		ypar=[7.475, 16.853,0]
	task=drift
		length=-0.1
	task=write
		out_file=DOGLEG/in/dogleg_in.fmt1
		format=fmt1

#15 dogleg (CSRtrack)
action=CSRtrack
	task=run
		work_dir=DOGLEG
		command=./CSRtrack_1.201_64_may2007

#16 CSRTrack  -> ASTRA
action=processor
	task=read
		sort_len=False
		extr_part_1=False
		E_ref=700000000.0
		in_file=DOGLEG/out/dogleg_out.fmt1
		format=fmt1
	task=center
		centerz=True
		centerx=True
	task=extract_slice_centr
		sigmaI=5e-007
		interv=[0, 0.00067]
		M=20000
	task=define_ref_part
	task=drift
		length=-1
	task=write
		z0=159.3203
		out_file=DOG2UNDU/dogleg_out.ini
		format=astra

#17 dogleg to undulator (ASTRA)
qaction=ASTRA
	task=run
		command=mpistart, /home/vogtm/bin/Astra64, dog_to_undu.in
		work_dir=DOG2UNDU





#18 Analysis
action=analysis
	task=read
		extr_part_1=True
		sort_len=True
		E_ref=700000000.0
		in_file=DOG2UNDU/dog_to_undu.2050.001
		format=astra
        task=slice_analysis
                M_av=2500
        task=m_current
                sigmaI=5e-007
        task=m_emmitance
        task=m_momentum
        task=m_rms_momentum
        task=m_hor_offset
        task=m_hor_slope
        task=m_Twissx
	task=m_Twissy
	task=m_topview
        !task=write
		!E_ref=0
		!out_file=d:/case1.txt
		!format=genesis
		!interv=[-0.5e-4,0.5e-4]
		!beta=[41.32,27.62]
		!nstep=20